Was thinking about Fugazi Grrl's comments about Vulcan characters: a running subplot for any Vulcan could be things like: SF offers all Vulcan's honorable discharges if they want to leave the fleet to help their people: a Vulcan officer, seeing that logically his people are doomed, so his best course of action is to preserve as much as their culture as he can, or maybe he wants to ensure that no FED race ever has to face what he has faced; or maybe he goes looney toons and tries to fix it (time travel plans? better keep him away from the Guardian of Forever...).
There was a comic out that showed some first season Star Trek episodes redone with the Abrahmsverse crew. It's available at your local bookseller.
Speaking of comics, a lot of the new Trek universe reminds me of the Marvel 'Ultimate' comic line: the basic premise is a lot like the movies (well, actually they are making the movies by borrowing heavily from the Ultimate line); superheroes first appear in the modern era, not back in the 60's: Peter Parker was bit by a spider a few years ago; the Fantastic Four were basically some scientists going for the 'X-Prize'/independant space program, for example.
One of the main things they do is substitute things; you may know the name (weapon X program for example), but the premise is changed (instead of an old program to make mutant super soldiers, it is now a program where mutants are kidnapped and forced to undertake extremely dangerous black ops missions for the US gov't). Also a lot of gender/race changes, as well as updating tech to make it more advanced than ours.
Depending on how things work for you, you must tell us how you did iconic figures from TOS: Kahn, Nomad and tribbles all sound great!
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"Yes, it's the Apocalypse alright. I always thought I'd have a hand in it"
Professor Farnsworth