You had me until the torpedoes, Matt. IMO, it's just not in the spirit of Trek (Section 31 or not) to min/max on a weapon system. Instead of using 6 microtorps, I'd recommend putting in a couple Type V or VI torps.
Also, what is the vessel's function? I know that you typed it as "specialized," but is the ship based on a different design (cruiser, destroyer, escort, etc.)?
Davy Jones
"Frightened? My dear, you are looking at a man who has laughed in the face of death, sneered at doom, and chuckled at catastrophe! I was petrified."
-- The Wizard of Oz